Full Models

CompNeuroPy.full_models.BGM

Bases: CompNeuroModel

The basal ganglia model based on the model from Goenner et al. (2021).

Attributes:

Name	Type	Description
name	str	name of the model
description	str	description of the model
model_creation_function	function	function which creates the model
compile_folder_name	str	name of the folder in which the model is compiled
model_kwargs	dict	keyword arguments for model_creation_function
populations	list	list of names of all populations of the model
projections	list	list of names of all projections of the model
created	bool	True if the model is created
compiled	bool	True if the model is compiled
attribute_df	pandas dataframe	dataframe containing all attributes of the model compartments
params	dict	dictionary containing all parameters of the model
name_appendix	str	string which is appended to all model compartments and parameters

Source code in src/CompNeuroPy/full_models/bgm_22/bgm.py

class BGM(CompNeuroModel):
    """
    The basal ganglia model based on the model from [Goenner et al. (2021)](https://doi.org/10.1111/ejn.15082).

    Attributes:
        name (str):
            name of the model
        description (str):
            description of the model
        model_creation_function (function):
            function which creates the model
        compile_folder_name (str):
            name of the folder in which the model is compiled
        model_kwargs (dict):
            keyword arguments for model_creation_function
        populations (list):
            list of names of all populations of the model
        projections (list):
            list of names of all projections of the model
        created (bool):
            True if the model is created
        compiled (bool):
            True if the model is compiled
        attribute_df (pandas dataframe):
            dataframe containing all attributes of the model compartments
        params (dict):
            dictionary containing all parameters of the model
        name_appendix (str):
            string which is appended to all model compartments and parameters
    """

    @check_types()
    def __init__(
        self,
        name: str = "BGM_v01_p01",
        do_create: bool = True,
        do_compile: bool = True,
        compile_folder_name: str | None = None,
        seed: int | None = None,
        name_appendix: str = "",
    ):
        """
        Args:
            name (str, optional):
                name of the model, syntax: "BGM_v<model_version>_p<parameters_version>"
                replace <model_version> and <parameters_version> with the versions you
                want to use, see CompNeuroPy.full_models.BGM_22.parameters for available
                versions. Default: "BGM_v01_p01"
            do_create (bool, optional):
                if True, the model is created after initialization. Default: True
            do_compile (bool, optional):
                if True, the model is compiled after creation. Default: True
            compile_folder_name (str, optional):
                name of the folder in which the compiled model is saved. Default: None,
                i.e. "annarchy_BGM_v<model_version>" is used
            seed (int, optional):
                the seed for the random number generator used during model creation.
                Default: None, i.e. random seed is used
            name_appendix (str, optional):
                string which is appended to all model compartments and parameters.
                Allows to create multiple models with the same name and keep names of
                compartments and parameters unique. Default: ""
        """
        ### check if name is correct, otherwise raise ValueError
        if not (
            len(name.split("_")) == 3
            and name.split("_")[0] == "BGM"
            and name.split("_")[1][0] == "v"
            and name.split("_")[2][0] == "p"
        ):
            raise ValueError(
                "name has to be of the form 'BGM_v<model_version>_p<parameters_version>'"
            )

        ### set attributes (except the ones which are set in the super().__init__())
        self.name_appendix = name_appendix
        self.seed = seed
        if len(self.name_appendix) > 0:
            self._name_appendix_to_add = ":" + name_appendix
        else:
            self._name_appendix_to_add = ""

        ### set model_version_name
        self._model_version_name = "_".join(name.split("_")[:2])

        ### update name with name_appendix
        name = name + self._name_appendix_to_add

        ### init default compile_folder_name
        if compile_folder_name == None:
            compile_folder_name = "annarchy_" + self._model_version_name

        ### set description
        description = (
            "The basal ganglia model based on the model from Goenner et al. (2021)"
        )

        ### init random number generator
        self._rng = np.random.default_rng(seed)

        ### get model parameters before init, ignore name_appendix
        self.params = self._get_params(name.split(":")[0])

        ### init
        super().__init__(
            model_creation_function=self._model_creation_function,
            name=name,
            description=description,
            do_create=do_create,
            do_compile=do_compile,
            compile_folder_name=compile_folder_name,
        )

    def _add_name_appendix(self):
        """
        Rename all model compartments, keys (except general) in params dict and
        names in attribute_df by appending the name_appendix to the original name.
        """

        ### update the attribute_df of the model object (it still contains the original
        ### names of the model creation)
        self.attribute_df["compartment_name"] = (
            self.attribute_df["compartment_name"] + self._name_appendix_to_add
        )
        ### rename populations and projections
        populations_new = []
        for pop_name in self.populations:
            populations_new.append(pop_name + self._name_appendix_to_add)
            get_population(pop_name).name = pop_name + self._name_appendix_to_add
        self.populations = populations_new
        projections_new = []
        for proj_name in self.projections:
            projections_new.append(proj_name + self._name_appendix_to_add)
            get_projection(proj_name).name = proj_name + self._name_appendix_to_add
        self.projections = projections_new
        ### rename parameter keys except general
        params_new = {}
        for key, param_val in self.params.items():
            param_object = key.split(".")[0]
            param_name = key.split(".")[1]

            if param_object == "general":
                params_new[key] = param_val
                continue

            param_object = param_object + self._name_appendix_to_add
            key_new = param_object + "." + param_name
            params_new[key_new] = param_val
        self.params = params_new

    def _model_creation_function(self):
        """
        Creates the model using the model_creation_function from the
        model_creation_functions.py file. The function is defined by the
        model_version_name.
        """
        model_creation_function = eval(
            "importlib.import_module('CompNeuroPy.full_models.bgm_22.model_creation_functions')."
            + self._model_version_name
        )
        model_creation_function(self)

    def create(self, do_compile=True, compile_folder_name=None):
        """
        Creates the model and optionally compiles it directly.

        Args:
            do_compile (bool, optional):
                If True the model is compiled directly. Default: True.
            compile_folder_name (str, optional):
                Name of the folder in which the model is compiled. Default: value from
                initialization.
        """
        ### create the model, but do not compile to set parameters before compilation
        super().create(do_compile=False, compile_folder_name=compile_folder_name)

        ### update names of compartments and parameters
        self._add_name_appendix()

        ### set parameters and connectivity of projections
        ### for each projection the connectivity has to be defined in the params
        self._set_params()
        self._set_noise_values()
        self._set_connections()

        ### compile the model, after setting all parameters (included in compile state)
        if do_compile:
            self.compile(compile_folder_name)

    def _set_params(self):
        """
        sets params of all populations
        """

        ### loop over all params
        for key, param_val in self.params.items():
            ### split key in param object and param name
            param_object = key.split(".")[0]
            param_name = key.split(".")[1]

            ### if param is a noise param --> skip (separate function)
            if param_name.split("_")[-1] == "noise":
                continue

            ### if param name ends with init --> actual param_name (in pop) is without init
            if param_name.split("_")[-1] == "init":
                param_name = "_".join(param_name.split("_")[:-1])

            ### if param_object is a pop in network
            if param_object in self.populations:
                ### and the param_name is an attribute of the pop --> set param of pop
                if param_name in vars(get_population(param_object))["attributes"]:
                    ### if parameter values are given as distribution --> get numpy array
                    if isinstance(param_val, str):
                        if (
                            "Uniform" in param_val
                            or "DiscreteUniform" in param_val
                            or "Normal" in param_val
                            or "LogNormal" in param_val
                            or "Exponential" in param_val
                            or "Gamma" in param_val
                        ):
                            distribution = eval(param_val)
                            param_val = distribution.get_values(
                                shape=get_population(param_object).geometry
                            )
                    self.set_param(
                        compartment=param_object,
                        parameter_name=param_name,
                        parameter_value=param_val,
                    )
                    ### if parameter base_mean --> also set I_base
                    if param_name == "base_mean":
                        self.set_param(
                            compartment=param_object,
                            parameter_name="I_base",
                            parameter_value=param_val,
                        )

    def _set_noise_values(self):
        """
        sets noise params of all populations
        """

        ### loop over all params
        for key, param_val in self.params.items():
            ### split key in param object and param name
            param_object = key.split(".")[0]
            param_name = key.split(".")[1]

            ### if param_object is a pop in network and param_name ends with noise --> set noise param of pop
            if (
                param_object in self.populations
                and param_name.split("_")[-1] == "noise"
            ):
                if param_name == "mean_rate_noise":
                    ### for mean and sd the actual parameter of the pop has to be calculated
                    mean = param_val
                    try:
                        ### noise values defined by mean and sd
                        sd = self.params[param_object + ".rate_sd_noise"]
                    except:
                        ### if only mean is available, only set mean
                        sd = 0
                    if sd != 0:
                        self.set_param(
                            compartment=param_object,
                            parameter_name="rates_noise",
                            parameter_value=self._rng.normal(
                                mean, sd, get_population(param_object).size
                            ),
                        )
                    else:
                        self.set_param(
                            compartment=param_object,
                            parameter_name="rates_noise",
                            parameter_value=mean,
                        )
                elif param_name in vars(get_population(param_object))["attributes"]:
                    ### noise parameters which are actual attributes of the pop are simply set
                    self.set_param(
                        compartment=param_object,
                        parameter_name=param_name,
                        parameter_value=param_val,
                    )
                else:
                    continue

    def _set_connections(self):
        """
        sets the connectivity and parameters of all projections
        """

        ### dict for each projection, which params were already set during connectivity definition
        already_set_params = {}

        ### set connectivity
        ### loop over all projections
        set_con_failed = False
        error_message_list = []
        for proj_name in self.projections:
            ### get the type of connectivity for projection
            try:
                connectivity = self.params[proj_name + ".connectivity"]
            except:
                print(
                    "\nERROR: missing connectivity parameter for",
                    proj_name,
                    "\n",
                    proj_name + ".connectivity",
                    "needed!\n",
                    "parameters id:",
                    self.params["general.id"],
                    "\n",
                )
                quit()

            possible_con_list = [
                "connect_fixed_number_pre",
                "connect_all_to_all",
                "connect_one_to_one",
                "connect_fixed_probability",
            ]
            if connectivity in possible_con_list:
                try:
                    # get all possible parameters of the connectivity function
                    con_func = eval(f"get_projection(proj_name).{connectivity}")
                    possible_con_params_list = list(
                        inspect.signature(con_func).parameters.keys()
                    )
                    # check if paramters are given in the params dict and create the kwargs for the connectivity function
                    con_kwargs = {}
                    for con_param_key in possible_con_params_list:
                        if proj_name + "." + con_param_key in self.params:
                            con_kwargs[con_param_key] = eval(
                                str(self.params[proj_name + "." + con_param_key])
                            )
                    # call the connectivity function with the obtained kwargs
                    con_func(**con_kwargs)
                    # store which parameters have been set
                    already_set_params[proj_name] = list(con_kwargs.keys())
                except:
                    exc_type, exc_value, exc_traceback = sys.exc_info()
                    error_message = traceback.format_exception_only(exc_type, exc_value)
                    error_message_list.append([f"ERROR: {proj_name}"] + error_message)
                    set_con_failed = True
            else:
                print(
                    "\nERROR: wrong connectivity parameter for",
                    proj_name + ".connectivity!\n",
                    "parameters id:",
                    self.params["general.id"],
                    "possible:",
                    possible_con_list,
                    "\n",
                )
                quit()
        if set_con_failed:
            print("\n")
            for error_message in error_message_list:
                print(" ".join(error_message))
            raise TypeError("Setting connectivities failed")

        ### set parameters
        ### loop over all params
        for key, param_val in self.params.items():
            ### split key in param object and param name
            param_object = key.split(".")[0]
            param_name = key.split(".")[1]

            if param_object == "general":
                continue

            ### if param_object is proj in network and param not already used and param is an attribute of proj --> set param of proj
            if (
                param_object in self.projections
                and not (param_name in already_set_params[param_object])
                and param_name in vars(get_projection(param_object))["attributes"]
            ):
                self.set_param(
                    compartment=param_object,
                    parameter_name=param_name,
                    parameter_value=param_val,
                )

    def _get_params(self, name):
        """
        read all parameters for specified model name

        Args:
            name (str):
                name of the model, specifies which column in the csv file is used
        """

        csvPath = os.path.dirname(os.path.realpath(__file__)) + "/parameters.csv"
        csvfile = open(csvPath, newline="")

        params = {}
        reader = csv.reader(csvfile, delimiter=",")
        fileRows = []
        idx = -1
        ### check if name is in the .csv file
        for row in reader:
            if row[0] == "":
                continue
            fileRows.append(row)
            if "general.id" == row[0] and True in [
                name == row[i] for i in range(1, len(row))
            ]:
                idx = [name == row[i] for i in range(1, len(row))].index(True) + 1
            elif "general.id" == row[0]:
                print(
                    "No Parameters available for given model name "
                    + name
                    + "! (file "
                    + csvPath
                    + ")"
                )
                quit()
        if idx == -1:
            print("No general.id in parameter csv file!")
            quit()
        ### read the column corresponding to name
        for row in fileRows:
            if "###" in row[0]:
                continue
            if row[idx] == "":
                continue

            value = row[idx]
            try:
                ### if float(value) works value is a number --> check if it is int
                if float(value) - int(float(value)) == 0:
                    params[row[0]] = int(float(value))
                else:
                    params[row[0]] = float(value)
            except:
                ### value is a string
                if value[0] == "$" and value[-1] == "$":
                    ### value is a formula
                    params[row[0]] = float(eval(value[1:-1]))
                else:
                    ### value is some other string
                    params[row[0]] = value
        csvfile.close()

        return params

    def _needed_imports(self):
        for import_val in [
            Uniform,
            DiscreteUniform,
            Normal,
            LogNormal,
            Exponential,
            Gamma,
            importlib,
        ]:
            print(import_val)

__init__(name='BGM_v01_p01', do_create=True, do_compile=True, compile_folder_name=None, seed=None, name_appendix='')

Parameters:

Name	Type	Description	Default
name	str	name of the model, syntax: "BGM_v_p" replace and with the versions you want to use, see CompNeuroPy.full_models.BGM_22.parameters for available versions. Default: "BGM_v01_p01"	'BGM_v01_p01'
do_create	bool	if True, the model is created after initialization. Default: True	True
do_compile	bool	if True, the model is compiled after creation. Default: True	True
compile_folder_name	str	name of the folder in which the compiled model is saved. Default: None, i.e. "annarchy_BGM_v" is used	None
seed	int	the seed for the random number generator used during model creation. Default: None, i.e. random seed is used	None
name_appendix	str	string which is appended to all model compartments and parameters. Allows to create multiple models with the same name and keep names of compartments and parameters unique. Default: ""	''

Source code in src/CompNeuroPy/full_models/bgm_22/bgm.py

@check_types()
def __init__(
    self,
    name: str = "BGM_v01_p01",
    do_create: bool = True,
    do_compile: bool = True,
    compile_folder_name: str | None = None,
    seed: int | None = None,
    name_appendix: str = "",
):
    """
    Args:
        name (str, optional):
            name of the model, syntax: "BGM_v<model_version>_p<parameters_version>"
            replace <model_version> and <parameters_version> with the versions you
            want to use, see CompNeuroPy.full_models.BGM_22.parameters for available
            versions. Default: "BGM_v01_p01"
        do_create (bool, optional):
            if True, the model is created after initialization. Default: True
        do_compile (bool, optional):
            if True, the model is compiled after creation. Default: True
        compile_folder_name (str, optional):
            name of the folder in which the compiled model is saved. Default: None,
            i.e. "annarchy_BGM_v<model_version>" is used
        seed (int, optional):
            the seed for the random number generator used during model creation.
            Default: None, i.e. random seed is used
        name_appendix (str, optional):
            string which is appended to all model compartments and parameters.
            Allows to create multiple models with the same name and keep names of
            compartments and parameters unique. Default: ""
    """
    ### check if name is correct, otherwise raise ValueError
    if not (
        len(name.split("_")) == 3
        and name.split("_")[0] == "BGM"
        and name.split("_")[1][0] == "v"
        and name.split("_")[2][0] == "p"
    ):
        raise ValueError(
            "name has to be of the form 'BGM_v<model_version>_p<parameters_version>'"
        )

    ### set attributes (except the ones which are set in the super().__init__())
    self.name_appendix = name_appendix
    self.seed = seed
    if len(self.name_appendix) > 0:
        self._name_appendix_to_add = ":" + name_appendix
    else:
        self._name_appendix_to_add = ""

    ### set model_version_name
    self._model_version_name = "_".join(name.split("_")[:2])

    ### update name with name_appendix
    name = name + self._name_appendix_to_add

    ### init default compile_folder_name
    if compile_folder_name == None:
        compile_folder_name = "annarchy_" + self._model_version_name

    ### set description
    description = (
        "The basal ganglia model based on the model from Goenner et al. (2021)"
    )

    ### init random number generator
    self._rng = np.random.default_rng(seed)

    ### get model parameters before init, ignore name_appendix
    self.params = self._get_params(name.split(":")[0])

    ### init
    super().__init__(
        model_creation_function=self._model_creation_function,
        name=name,
        description=description,
        do_create=do_create,
        do_compile=do_compile,
        compile_folder_name=compile_folder_name,
    )

create(do_compile=True, compile_folder_name=None)

Creates the model and optionally compiles it directly.

Parameters:

Name	Type	Description	Default
do_compile	bool	If True the model is compiled directly. Default: True.	True
compile_folder_name	str	Name of the folder in which the model is compiled. Default: value from initialization.	None

Source code in src/CompNeuroPy/full_models/bgm_22/bgm.py

def create(self, do_compile=True, compile_folder_name=None):
    """
    Creates the model and optionally compiles it directly.

    Args:
        do_compile (bool, optional):
            If True the model is compiled directly. Default: True.
        compile_folder_name (str, optional):
            Name of the folder in which the model is compiled. Default: value from
            initialization.
    """
    ### create the model, but do not compile to set parameters before compilation
    super().create(do_compile=False, compile_folder_name=compile_folder_name)

    ### update names of compartments and parameters
    self._add_name_appendix()

    ### set parameters and connectivity of projections
    ### for each projection the connectivity has to be defined in the params
    self._set_params()
    self._set_noise_values()
    self._set_connections()

    ### compile the model, after setting all parameters (included in compile state)
    if do_compile:
        self.compile(compile_folder_name)

CompNeuroPy.full_models.HHmodelBischop

Bases: CompNeuroModel

Generates a single population of the Hodgkin & Huxley neuron model of Bischop et al. (2012) and optionally creates/compiles the network.

Source code in src/CompNeuroPy/full_models/hodgkin_huxley_single_pop.py

class HHmodelBischop(CompNeuroModel):
    """
    Generates a single population of the Hodgkin & Huxley neuron model of
    [Bischop et al. (2012)](https://doi.org/10.3389/fnmol.2012.00078) and optionally
    creates/compiles the network.
    """

    def __init__(
        self,
        pop_size=1,
        conductance_based_synapses=False,
        name="single_HH_Bischop",
        do_create=True,
        do_compile=True,
        compile_folder_name="annarchy_single_HH_Bischop",
    ):
        """
        Args:
            pop_size (int, optional):
                Number of neurons in the population. Default: 1.
            conductance_based_synapses (bool, optional):
                Whether the equations contain conductance based synapses for AMPA and
                GABA. Default: False.
            name (str, optional):
                Name of the model. Default: "single_HH_Bischop".
            do_create (bool, optional):
                Whether to create the model. Default: True.
            do_compile (bool, optional):
                Whether to compile the model. Default: True.
            compile_folder_name (str, optional):
                Name of the folder for the compiled model.
                Default: "annarchy_single_HH_Bischop".
        """
        ### set attributes
        self.pop_size = pop_size
        self.conductance_based_synapses = conductance_based_synapses
        # define description
        description = """
            One population "HH_Bischop" with a single neuron of the Hodgkin
            & Huxley neuron model of Bischop et al. (2012).
        """
        # initialize CompNeuroModel
        super().__init__(
            model_creation_function=self._bischop_2012_creation_function,
            name=name,
            description=description,
            do_create=do_create,
            do_compile=do_compile,
            compile_folder_name=compile_folder_name,
        )

    def _bischop_2012_creation_function(self):
        if self.conductance_based_synapses:
            Population(self.pop_size, neuron=HHneuronBischopSyn, name="HH_Bischop_syn")
        else:
            Population(self.pop_size, neuron=HHneuronBischop, name="HH_Bischop")

__init__(pop_size=1, conductance_based_synapses=False, name='single_HH_Bischop', do_create=True, do_compile=True, compile_folder_name='annarchy_single_HH_Bischop')

Parameters:

Name	Type	Description	Default
pop_size	int	Number of neurons in the population. Default: 1.	1
conductance_based_synapses	bool	Whether the equations contain conductance based synapses for AMPA and GABA. Default: False.	False
name	str	Name of the model. Default: "single_HH_Bischop".	'single_HH_Bischop'
do_create	bool	Whether to create the model. Default: True.	True
do_compile	bool	Whether to compile the model. Default: True.	True
compile_folder_name	str	Name of the folder for the compiled model. Default: "annarchy_single_HH_Bischop".	'annarchy_single_HH_Bischop'

Source code in src/CompNeuroPy/full_models/hodgkin_huxley_single_pop.py

def __init__(
    self,
    pop_size=1,
    conductance_based_synapses=False,
    name="single_HH_Bischop",
    do_create=True,
    do_compile=True,
    compile_folder_name="annarchy_single_HH_Bischop",
):
    """
    Args:
        pop_size (int, optional):
            Number of neurons in the population. Default: 1.
        conductance_based_synapses (bool, optional):
            Whether the equations contain conductance based synapses for AMPA and
            GABA. Default: False.
        name (str, optional):
            Name of the model. Default: "single_HH_Bischop".
        do_create (bool, optional):
            Whether to create the model. Default: True.
        do_compile (bool, optional):
            Whether to compile the model. Default: True.
        compile_folder_name (str, optional):
            Name of the folder for the compiled model.
            Default: "annarchy_single_HH_Bischop".
    """
    ### set attributes
    self.pop_size = pop_size
    self.conductance_based_synapses = conductance_based_synapses
    # define description
    description = """
        One population "HH_Bischop" with a single neuron of the Hodgkin
        & Huxley neuron model of Bischop et al. (2012).
    """
    # initialize CompNeuroModel
    super().__init__(
        model_creation_function=self._bischop_2012_creation_function,
        name=name,
        description=description,
        do_create=do_create,
        do_compile=do_compile,
        compile_folder_name=compile_folder_name,
    )

CompNeuroPy.full_models.HHmodelCorbit

Bases: CompNeuroModel

Generates a single population of the Hodgkin & Huxley neuron model of Corbit et al. (2016) and optionally creates/compiles the network.

Source code in src/CompNeuroPy/full_models/hodgkin_huxley_single_pop.py

class HHmodelCorbit(CompNeuroModel):
    """
    Generates a single population of the Hodgkin & Huxley neuron model of
    [Corbit et al. (2016)](https://doi.org/10.1523/JNEUROSCI.0339-16.2016) and
    optionally creates/compiles the network.
    """

    def __init__(
        self,
        pop_size=1,
        conductance_based_synapses=False,
        name="single_HH_Corbit",
        do_create=True,
        do_compile=True,
        compile_folder_name="annarchy_single_HH_Corbit",
    ):
        """
        Args:
            pop_size (int, optional):
                Number of neurons in the population. Default: 1.
            conductance_based_synapses (bool, optional):
                Whether the equations contain conductance based synapses for AMPA and
                GABA. Default: False.
            name (str, optional):
                Name of the model. Default: "single_HH_Corbit".
            do_create (bool, optional):
                Whether to create the model. Default: True.
            do_compile (bool, optional):
                Whether to compile the model. Default: True.
            compile_folder_name (str, optional):
                Name of the folder for the compiled model.
                Default: "annarchy_single_HH_Corbit".
        """
        ### set attributes
        self.pop_size = pop_size
        self.conductance_based_synapses = conductance_based_synapses
        # define description
        description = """
            One population "HH_Bischop" with a single neuron of the Hodgkin
            & Huxley neuron model of Bischop et al. (2012).
        """
        # initialize CompNeuroModel
        super().__init__(
            model_creation_function=self._model_creation_function,
            name=name,
            description=description,
            do_create=do_create,
            do_compile=do_compile,
            compile_folder_name=compile_folder_name,
        )

    def _model_creation_function(self):
        if self.conductance_based_synapses:
            Population(self.pop_size, neuron=HHneuronCorbitSyn, name="HH_Corbit_syn")
        else:
            Population(self.pop_size, neuron=HHneuronCorbit, name="HH_Corbit")

__init__(pop_size=1, conductance_based_synapses=False, name='single_HH_Corbit', do_create=True, do_compile=True, compile_folder_name='annarchy_single_HH_Corbit')

Parameters:

Name	Type	Description	Default
pop_size	int	Number of neurons in the population. Default: 1.	1
conductance_based_synapses	bool	Whether the equations contain conductance based synapses for AMPA and GABA. Default: False.	False
name	str	Name of the model. Default: "single_HH_Corbit".	'single_HH_Corbit'
do_create	bool	Whether to create the model. Default: True.	True
do_compile	bool	Whether to compile the model. Default: True.	True
compile_folder_name	str	Name of the folder for the compiled model. Default: "annarchy_single_HH_Corbit".	'annarchy_single_HH_Corbit'

Source code in src/CompNeuroPy/full_models/hodgkin_huxley_single_pop.py

def __init__(
    self,
    pop_size=1,
    conductance_based_synapses=False,
    name="single_HH_Corbit",
    do_create=True,
    do_compile=True,
    compile_folder_name="annarchy_single_HH_Corbit",
):
    """
    Args:
        pop_size (int, optional):
            Number of neurons in the population. Default: 1.
        conductance_based_synapses (bool, optional):
            Whether the equations contain conductance based synapses for AMPA and
            GABA. Default: False.
        name (str, optional):
            Name of the model. Default: "single_HH_Corbit".
        do_create (bool, optional):
            Whether to create the model. Default: True.
        do_compile (bool, optional):
            Whether to compile the model. Default: True.
        compile_folder_name (str, optional):
            Name of the folder for the compiled model.
            Default: "annarchy_single_HH_Corbit".
    """
    ### set attributes
    self.pop_size = pop_size
    self.conductance_based_synapses = conductance_based_synapses
    # define description
    description = """
        One population "HH_Bischop" with a single neuron of the Hodgkin
        & Huxley neuron model of Bischop et al. (2012).
    """
    # initialize CompNeuroModel
    super().__init__(
        model_creation_function=self._model_creation_function,
        name=name,
        description=description,
        do_create=do_create,
        do_compile=do_compile,
        compile_folder_name=compile_folder_name,
    )